#TidyTuesday + WebR
WebR is a version of R that runs in the browser. You don’t need to install R and no one needs to setup a server. It just works - even your phone. This site lets you use it for this weeks Tidy Tuesday on long-term monitoring data on mammals from the Portal Project.
Data
The dataset is on the long-term dynamics of rodent species. It has three tables:
surveys
- which has one row for each individual animal caught including where, when, and information on the individual (e.g., size)
species
, which has one row for each species in the dataset
plots
, which has one row per plot that tells you if the plot is a control
plot or an exclosure
plot where the dominant kangaroo rat species have been excluded.
censusdate month day year treatment plot stake species sex reprod age
1 1978-01-08 1 8 1978 exclosure 3 11 OL <NA> <NA> <NA>
2 1978-01-08 1 8 1978 exclosure 3 22 NA <NA> <NA> <NA>
3 1978-01-08 1 8 1978 exclosure 3 54 PF M <NA> <NA>
4 1978-01-08 1 9 1978 control 14 14 OT <NA> <NA> <NA>
5 1978-01-08 1 9 1978 control 17 14 DM M Z <NA>
6 1978-01-08 1 9 1978 control 17 16 DM F <NA> <NA>
testes vagina pregnant nipples lactation hfl wgt tag note2 ltag note3
1 <NA> <NA> <NA> <NA> <NA> NA NA 0 <NA> 0 <NA>
2 <NA> <NA> <NA> <NA> <NA> NA NA 0 <NA> 0 <NA>
3 S <NA> <NA> <NA> <NA> 15 7 0 <NA> 0 <NA>
4 <NA> <NA> <NA> <NA> <NA> NA NA 0 <NA> 0 <NA>
5 <NA> <NA> <NA> <NA> <NA> 36 40 4872 <NA> 0 <NA>
6 <NA> S <NA> <NA> <NA> 34 37 4881 <NA> 0 <NA>
species scientificname taxa commonname censustarget
1 BA Baiomys taylori Rodent Northern pygmy mouse 1
2 PB Chaetodipus baileyi Rodent Bailey's pocket mouse 1
3 PH Chaetodipus hispidus Rodent Hispid pocket mouse 1
4 PI Chaetodipus intermedius Rodent Rock pocket mouse 1
5 PP Chaetodipus penicillatus Rodent Desert pocket mouse 1
6 DM Dipodomys merriami Rodent Merriam's kangaroo rat 1
unidentified rodent granivore minhfl meanhfl maxhfl minwgt meanwgt maxwgt
1 0 1 1 6 13.25065 15 6 9.449086 18
2 0 1 1 16 26.03125 47 10 31.873515 79
3 0 1 1 21 25.12821 28 18 30.717949 48
4 0 1 1 18 21.96262 24 10 17.466667 28
5 0 1 1 11 21.47861 27 4 17.618513 42
6 0 1 1 21 35.88389 50 13 43.527217 66
juvwgt
1 NA
2 18.99505
3 24.00000
4 10.00000
5 11.66603
6 26.39258
plot treatment
1 3 exclosure
2 4 control
3 11 control
4 14 control
5 15 exclosure
6 17 control
Let’s go!
There are three WebR-enabled pages on this site:
- Getting Started - will walk you through loading the data and installing packages in WebR
- Base R - gives you a Base R only setup with the data already loaded
- Tidyverse - gives you R + dplyr + ggplot2 and the data already loaded. This page takes about 20 seconds to load the packages